PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G186300.1
Common NameB456_004G186300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 149aa    MW: 15238.7 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G186300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.27.2e-152953125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL+YP+GA+sV+Ca+C+++
  Gorai.004G186300.1 29 CSGCRNLLMYPAGATSVCCAVCNAI 53
                        ***********************97 PP

2zf-LSD146.75e-156892125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL+Y rGA+sV+C++C+tV
  Gorai.004G186300.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                        ************************9 PP

3zf-LSD141.81.7e-13106130125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Gorai.004G186300.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                         ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.4E-142656IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-122953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.42E-529127IPR011031Multihaem cytochrome
TIGRFAMsTIGR010539.0E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.1E-12103131IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MPVPLAPYPT PPGSYTPPVN AGAQSQLVCS GCRNLLMYPA GATSVCCAVC NAITAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSAGGSASGA AEQKFNNT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475710.19e-93PREDICTED: protein LOL1-like
RefseqXP_012475711.19e-93PREDICTED: protein LOL1-like
RefseqXP_012475712.19e-93PREDICTED: protein LOL1-like
SwissprotQ93ZB11e-79LOL1_ARATH; Protein LOL1
TrEMBLA0A0D2R0531e-103A0A0D2R053_G
STRINGVIT_02s0012g00990.t011e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-75lsd one like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]